FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3245840
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG316655897.55742735316589No Hit
ATTGGCCG238430.734571020136544No Hit
ATTGGACA70460.21707785966036527No Hit
ATTGGACC62780.1934168042787075No Hit
AATGGACG50040.1541665639711138No Hit
ATAGGACG49760.15330392132699086No Hit
ATTGGAAG36650.11291376038252039No Hit
ATTGCACG35150.10829246050329036No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)