FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004946800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31350270
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC3074307098.06317457552997No Hit
CAACCATA1385230.44185584366578023No Hit
CAACCAAC1045080.3333559806661952No Hit
AAACCATC508800.1622952529595439No Hit
CACCCATC471670.15045165480233505No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)