FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3219211
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT79180.24596088917439707No Hit
GGGGGGGGGGGGGGGG76000.23608269231187393No Hit
TCGCGGTGAGTCTTGA66340.20607533957854893No Hit
GTTAAGAGAGTACGTT65290.20281367080318746No Hit
TACCAGTGATACGATC55160.17134633299898638No Hit
ATCTTACTGGTTTGGT54730.17001060197669554No Hit
CGCTTACTGATCACAC54250.16851955339367317No Hit
TTGTGGTGAAAGACAT53460.16606553593411555No Hit
ATTCCTAACTGCGTGC51320.15941794433480752No Hit
ATAGATGGAGAGTAAT51250.1592004997497834No Hit
ATATGCCGAGAACAGC48610.15099973254316043No Hit
TGGAACACTTGAGGCA45830.14236407616648925No Hit
CTTTCTGCTCTTGTGA43830.1361513737372294No Hit
CTTGACGCTCAGGGTA43220.13425649949630514No Hit
GCTATACGACAGGTGA42860.1331382130590384No Hit
AGCTCTGCTGGCCTGT40920.12711189170265633No Hit
ACTGGAACTCTGGAAG40090.1245336201945135No Hit
AGGTAGCGATTGACCA39120.12152045951632248No Hit
TGTGACTGACCGTTAA38700.12021579200617791No Hit
TGTACCCTGCTGAGAG37340.11599115435428121No Hit
ACCCTTTCTAGGTGAC36450.11322650177326059No Hit
TTCCAAACTCCGCTAG35390.10993376948575287No Hit
TCCCAGACTCCTAACA34880.10834953036629161No Hit
AGTTCACGACCAGAGA34460.10704486285614706No Hit
ACATGTGTGTCAATGC34340.10667210071039146No Hit
TCAGTCCACCCAGCAC34240.10636146558892848No Hit
CAGTGGAGAGATCATC32930.10229214549776328No Hit
ACACTCCACCGTACAT32790.10185725632771507No Hit
GCGGTTCGAAGCAAGC32560.1011427955483502No Hit
CACAGCTCTCTCTGGG32440.1007700334025946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)