FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2006733
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA196251797.7966176865582No Hit
CGTGCAAA78410.39073459199604527No Hit
AGTGCTAA39860.19863130770261914No Hit
CGAGCTAA38280.19075781381977575No Hit
CGTGGTAA37290.18582442208305738No Hit
CGGGCTAA34870.17376502005996813No Hit
CGTCCTAA22840.11381683562287559No Hit
CGTGCTTA21760.10843495372827378No Hit
CCTGCTAA20740.10335206527226093No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)