FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946812

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946812
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13074886
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTAGGTT1289089198.59276019691491No Hit
CGTAGGTA569550.43560609247376997No Hit
CGAAGGTT165460.1265479484868931No Hit
CGTAGGAT157730.1206358510506325No Hit
CGTAGGGT150260.11492260812063677No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)