FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3717379
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC364453098.04031281179563No Hit
GGGCCTAC143750.3866971863778216No Hit
GGGACTAA96140.25862307824948705No Hit
GGGACAAC67490.18155264771227256No Hit
GGGAATAC43320.11653371905312856No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)