FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2555135
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT77770.3043674796047958No Hit
TCGCGGTGAGTCTTGA69010.2700835767973121No Hit
GGGGGGGGGGGGGGGG60080.2351343471088612No Hit
GTTAAGAGAGTACGTT51430.20128094993023848No Hit
CGCTTACTGATCACAC46380.18151682787797904No Hit
TACCAGTGATACGATC43590.17059763965504757No Hit
ATCTTACTGGTTTGGT41910.1640226445960781No Hit
ATTCCTAACTGCGTGC41690.1631616333383559No Hit
TTGTGGTGAAAGACAT41440.16218321145458067No Hit
ATAGATGGAGAGTAAT41000.16046118893913627No Hit
ATATGCCGAGAACAGC40370.15799556579202273No Hit
TGGAACACTTGAGGCA37790.14789825195146244No Hit
GCTATACGACAGGTGA36880.14433679629452065No Hit
CTTGACGCTCAGGGTA34810.13623546309686183No Hit
CTTTCTGCTCTTGTGA33750.13208695430965486No Hit
AGCTCTGCTGGCCTGT33630.13161731180544278No Hit
GCGGTTCGAAGCAAGC33460.13095198492447563No Hit
AGGTAGCGATTGACCA33150.12973874178859435No Hit
AGTTCACGACCAGAGA31640.123829073610592No Hit
ACTGGAACTCTGGAAG31600.12367252610918796No Hit
TGTGACTGACCGTTAA31430.12300719922822081No Hit
ACCCTTTCTAGGTGAC30370.11885869044101387No Hit
TGTACCCTGCTGAGAG29620.11592342478968821No Hit
TCAGTCCACCCAGCAC28780.11263592726020347No Hit
ACATGTGTGTCAATGC28430.11126613662291815No Hit
TTCCAAACTCCGCTAG28400.11114872599686514No Hit
ACACTCCACCGTACAT27770.10868310284975159No Hit
CACAGCTCTCTCTGGG27380.10715676471106222No Hit
ACGCTCTTGCCTCAAA27000.10566956344772391No Hit
CAGTGGAGAGATCATC26980.10559128969702188No Hit
GAACTACTGGCCCTGA26680.10441718343649162No Hit
TCCCAGACTCCTAACA26570.10398667780763052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)