FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4686612
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA456093897.31844667320443No Hit
CAGGAAGC299220.6384569492844725No Hit
CAGGAACA129040.275337493268058No Hit
CACGAAGA100520.21448329838271227No Hit
CAGGAATA98750.21070658292173536No Hit
CAGCAAGA83960.179148604578318No Hit
CAGGATGA79810.17029359375173367No Hit
CAGGAAAA75040.16011566564503313No Hit
AAGGAAGA61020.13020066521401813No Hit
CAGTAAGA60580.12926182069264536No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)