FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004946843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19167244
Sequences flagged as poor quality0
Sequence length34
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACAG30900.09.0612445
TATACTG21450.08.9414845
TAGACTG25650.08.514395
TACACTG32150.08.4912185
TAGGACT25300.08.1895464
CTAGGAC27900.07.9783213
CTAATAC18850.07.9467773
CTAGTAC12950.07.89172123
GTATTAG19350.07.66936451
CGTATAC4204.2200554E-107.66650063
GTATACG4401.4006218E-107.6364771
TAGAACC20950.07.6179734
CTAGAAC29550.07.5802083
ATAGTAC14800.07.56740333
CCTACAC27950.07.56334163
TAGGACC20950.07.55114844
GTATAGG16700.07.4611881
TAGTACA18800.07.44664674
TATACAG25200.07.4442445
GTATAGA18650.07.43174551