FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2907452
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA282877497.29391921173591No Hit
CGTGCAAA121920.4193362435562135No Hit
CGTGCGAA71990.2476051195342176No Hit
CGAGCTAA65030.22366663318947314No Hit
CGTGGTAA58280.20045042876030283No Hit
CGTGCTTA46400.15958990896496314No Hit
CCTGCTAA46120.15862686641086424No Hit
CGTCCTAA43410.149305990262264No Hit
CGGGCTAA43230.14868689147748612No Hit
CGTTCTAA38540.1325559286963293No Hit
AGTGCTAA33840.11639057153824035No Hit
CGTGATAA31970.10995882305193688No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)