FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4074462
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC397380597.52956341229836No Hit
CCGCTTAC124100.3045800893467653No Hit
CAGCTTAA115620.28376752562669627No Hit
CAGCATAC110840.27203591541656297No Hit
CAGCTAAC101400.2488672124074295No Hit
AAGCTTAC86170.21148804431112625No Hit
CACCTTAC74380.1825517086673038No Hit
CAGATTAC68790.16883210593202244No Hit
CATCTTAC46430.11395369499089697No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)