FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3926865
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA148560.37831705444419406No Hit
CATTCAACTAGGCATG145270.3699388698109052No Hit
GTCGACCGATGCTCAA134580.34271613615441326No Hit
ACTGGGCACTTCTCGC115220.29341472141262814No Hit
GGGGGGGGGGGGGGGG113930.2901296581369617No Hit
TGTAAGCTGTTGTGAC110470.2813185581882749No Hit
GCTTTAGGAACTAGTC91370.23267924922298067No Hit
TAGTTGCGACATAGCT66760.1700083909174367No Hit
CATCAGTGATTCGCAA65150.16590842822455062No Hit
CAGGAGCCTCGTGCAC53940.13736148301507692No Hit
CAGGAGCCTTCCAATG48260.12289701835942922No Hit
TCCTTAAACAGGGAGG44680.11378033112928507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)