FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4185694
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA410156597.9900824092731No Hit
TAGGAAAA130260.3112028734064172No Hit
AAGGTAAA120880.2887932084858568No Hit
TAGCTAAA85310.20381327445341205No Hit
TACGTAAA82880.19800778556674234No Hit
TATGTAAA59400.14191195056303688No Hit
TAGGTAAT50340.12026679446705851No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)