FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1528801
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT242501.5862103700874084No Hit
AAATAGGTGTTGCGTA131710.8615248158524229No Hit
GGCTTGCGACGACATT124130.8119434772740207No Hit
TATCACTACTGGTCCG112920.7386180411969904No Hit
ATGGGTTACCATGCGC109790.7181444805439033No Hit
GTGTTGTGAGGGTAGT74120.484824381983005No Hit
CTAATCTTGCCACTTC70320.459968301956893No Hit
CTGCTTTCTCCACTTC65940.43131839918995346No Hit
AGAGAATTGCCTCCTA60940.39861303073454296No Hit
GGGGGGGGGGGGGGGG52140.3410515822530205No Hit
CTGGCCAGAGGAATGC47470.31050476811566713No Hit
AGCCGAGCTGCCCTTT46070.30134726494815217No Hit
AATGGTGCTTCGTACA42420.27747234597570253No Hit
TCCCTGTGACCCGCAA35970.23528242066822302No Hit
GCTCCTAACCTATCTT34190.22363930949809685No Hit
TGCCGTTACAATCTGC32980.21572461033188753No Hit
GAGAGAAGACTCACGG32880.21507050296277935No Hit
CTTAATCTGGGAATTA31460.20578217832144274No Hit
TTGTCAACTAATACAG30300.1981945328397875No Hit
GCTGTTCTGATAGGTA29150.1906722980950431No Hit
TCTTTCCACCGAGTGA28450.18609354651128565No Hit
TAGCGCGACAAGACAT27860.1822343130335472No Hit
GTAATCGTGATCCTCC27820.18197267008590393No Hit
GGGATGTGAAGGTGCA27240.1781788473450763No Hit
AGTCCTGCTCCTAGTA26360.17242270249692407No Hit
TCGTATACTTTCTGGA26200.1713761307063509No Hit
GTTGTTGGATTCCATT23960.15672412563832702No Hit
TGCAATGACACCTTGA23070.15090257005326396No Hit
TGTCAATCTGGTGTCC22760.1488748372090285No Hit
TTGCGTCACCACTCAA22250.14553888962657663No Hit
GCAAATCTGGAATTGA22180.1450810144682009No Hit
TTGTTTGTGGCGCTGT21660.1416796561488382No Hit
TACGCCTTGCTGATCA21480.14050226288444342No Hit
CAAGTGGGATAGCGAG20580.13461529656246954No Hit
CCTTTCTACTCGGGCT20560.13448447508864791No Hit
TACAACCGATCGCTAA20400.13343790329807476No Hit
CCCACCTCTCATGATC20370.1332416710873423No Hit
GGTTGAACTTCTTTGT19440.12715847255463597No Hit
TAAGGGCGATTTCTTG19420.12702765108081432No Hit
AATCCAGACTACCAAC19320.12637354371170612No Hit
CCTTTCTACTCATTTC19250.12591566855333036No Hit
TTCCACTCTCGAATCT18640.12192561360177027No Hit
AGAACGCGAGGAGTCA18450.12068280960046468No Hit
TCTTTCCACTTCGCAA18180.1189167197038725No Hit
GAGGTGCCTTCGTACA18050.11806638012403184No Hit
CTGCCATTGTCTTTGT17870.11688898685963706No Hit
GTGGTAACTTTTCCGC17390.11374927148791766No Hit
GAGAGGTTGATGTGGG17090.11178694938059303No Hit
GCTCCTAACGAATAGT16970.11100202053766317No Hit
CGGAATTTGAGAGGCT16890.1104787346423766No Hit
TATTGCTTGTTCGTTT16520.10805853737667623No Hit
AGCACATTGCTGGAAG16130.1055075186371542No Hit
ATGTGTGTGCCTTTGC16100.10531128642642174No Hit
CTAATCACTGCTCAGC16070.1051150542156893No Hit
CTTAGAGACGCTCTTC15580.10190992810705907No Hit
CGTTTGCTGGCTAATC15540.10164828515941578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)