FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4513180
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA432554295.84244368715629No Hit
TCCTGCGA535021.1854612490527745No Hit
TCATGCGC232430.5150027253510828No Hit
TCATGCAA122270.27091762349385573No Hit
TCAAGCGA109380.24235683043884798No Hit
ACATGCGA93260.20663922112568078No Hit
TCATGCCA91690.20316052096304602No Hit
TCATCCGA90080.1995931914969046No Hit
TCATGAGA83010.18392796210210982No Hit
TAATGCGA77940.17269419788264595No Hit
TCATGCGT56920.12611949888991797No Hit
TCATGGGA48890.10832716621096433No Hit
TCAGGCGA45480.1007715180870251No Hit
TCATGCTA45220.1001954276142321No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)