FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4549569
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA233540.5133233499700741No Hit
CGACCAGACGCGCTGT219240.4818918011794084No Hit
TAGCTTTACCCTATCC204110.44863590375264123No Hit
CCAGGACTGTAACTCG159070.34963751511406904No Hit
ATCTGTACTGGGACTA152610.33543836789814596No Hit
GTTCTCGACCGTAGAG139470.3065565111772126No Hit
CTTCCTTTGGCTCAGC138080.3035012767143437No Hit
CGATCAAACCCGGCTA131110.2881811441919004No Hit
AGACCATTGAATCCAC119580.2628380842229231No Hit
GGCAACAGAATAGCAA113570.24962804168922373No Hit
TGCTGCTACTTTCTTG113560.24960606158517434No Hit
GGGGGGGGGGGGGGGG112460.24718825013973852No Hit
ACAGCCGACTTGCGTA104880.23052733127028077No Hit
AACTTACCTCACCTAA96880.21294324803074755No Hit
CGCGTTGGAGCGGTTC93830.2062393162956755No Hit
ATCGAAAGATTTCCGC87920.1932490748024703No Hit
GTAACTGTGTGAAAGT86560.19025978065174964No Hit
CCCTGAACTAGCTTTG85820.18863325295209282No Hit
AGTGGAGTGAGTTGAA84380.18546811796897683No Hit
CAATTCGGATAACGGG80980.17799488259217522No Hit
GGGTAGAACCAGTCTA78750.17309331938915531No Hit
TTCCTAAACTAATGCC73770.16214722757254588No Hit
AAGAACCCTTAACCCA73550.1616636652834587No Hit
CGCGATCGATATCTGG71600.15737754499382248No Hit
TTTAGTCTGAGCAATA70470.15489379323623842No Hit
GATGAATGACTCCTAC70170.15423439011475593No Hit
TCCGGGAACGTTCTCC69700.15320132522443336No Hit
GTGAAGCGATCCCAGG67840.14911302587124187No Hit
TGGAACACTCCTAGTA67590.14856352327000646No Hit
TGCAGATACTGCCACG67520.14840966254166052No Hit
CTTTAACTGTCCGTAA64890.142628895176664No Hit
TGATAGAGAGACTGTT64150.14100236747700717No Hit
CACATCCTGAGCCTAT63100.13869445655181845No Hit
AGGTGTGGATCATGTG62700.13781525238984177No Hit
CATAGGTACAAGGTGC62610.13761743145339703No Hit
GCAACTTGAAGGTGCA61910.13607882416993786No Hit
TGCAGTATGACACCGC61690.1355952618808507No Hit
AGTCCTGCTCGAACGA60960.13399071428524328No Hit
CTATTGGGACTTGTGA60950.13396873418119387No Hit
TCTCAGAGATGCATGT60360.1326719080422783No Hit
CTTAGATCTTGTCACA60200.1323202263774876No Hit
ATTTCTGACGGGTAGT59660.13113330075881913No Hit
TCAAAGCACTCTGCAA58780.12919905160247047No Hit
TACGTTTACTGCACCG58610.12882538983363037No Hit
TGGCAATTGAGTGGTG58160.12783628515140663No Hit
ATGTACGTGTACTTTC57760.12695708098942998No Hit
TGAACTGTGAACGTAA56980.1252426328735755No Hit
TGAGGGATGTACGTTG56920.12511075224927898No Hit
GAGTGTTACACCTGCG56400.12396778683870933No Hit
GGTCTAAACTCCTACC56250.12363808527796809No Hit
AGAGTACCTTAATCGC56030.12315452298888092No Hit
CGAGTCTCTGCTACGC55270.12148403508112526No Hit
GGTCGCATGGTACTAC54880.12062681102319801No Hit
TCTATGGGATGCTCAA54660.12014324873411085No Hit
TTCTTAGACGTCCCGA54220.11917612415593654No Hit
TCCATTTGAAATCTGC53640.11790127812107036No Hit
GCATGATACTTGCGTA52460.11530762584323921No Hit
GGGATGTGACTGGAAG51700.11363713793548356No Hit
GGGTGTGCTCGCAAAG51690.11361515783143415No Hit
TACTGTTTGCTTAAGC51680.11359317772738473No Hit
CATTCTATGCCTAGCG50820.11170288877913491No Hit
GTAATCTCTACACAAA50690.11141714742649247No Hit
TTGCGGTCTTTTGGGT50110.11014230139162634No Hit
CACCAGGTGCGCCACA49790.109438938062045No Hit
TCCGGGTGAACACCTA49780.10941695795799557No Hit
GGCTGACTGAAACTGA49580.10897735587700726No Hit
AGACTACTGGCCCTAG49530.10886745535676016No Hit
TCGGACCGATAGGCGA48810.10728488786520217No Hit
CTACAACGAATCTGTG48490.10658152453562085No Hit
CTAGCTCACGAATAGT48440.10647162401537377No Hit
CTTTCGTCTCGAACGA47570.10455935496307453No Hit
ATGTCCAGACCGCTAG47550.10451539475497568No Hit
CGAGTCTCTTGGAACG47220.10379005132134494No Hit
TGTAAGCACGCGCTGT47180.10370213090514727No Hit
TGCTAGTGAAGGCGTA46980.10326252882415896No Hit
AGCCAATTGTTATGGC46890.1030647078877142No Hit
CACATTACTGATGGAC46810.10288886705531887No Hit
ACCAAGTTGAAGCTAA46650.1025371853905282No Hit
TGCGCAGACATCAGGG46310.10178986185284804No Hit
TAGTACCGAACGAGCA46020.10115243883541496No Hit
GGGCCTTGACTATCTT45920.1009326377949208No Hit
CATAGTCGAAGATTCC45790.10064689644227838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)