FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3842690
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT645561.679968980063445No Hit
GAAGCAGTGGAACCTT246580.6416859023236327No Hit
GTTCTTCCTAACGTAA198450.516435101452368No Hit
CGCTTAAGATAATAGG155020.40341531583343965No Hit
GATACGTACCGCTCGA153440.39930361283371807No Hit
CATGGAGGATCGACAT152650.3972477613338573No Hit
TGTCCCATGAGACAAT150670.3920951208658518No Hit
AAAGCATGATCTTTGT142340.3704175980888388No Hit
TGAGCGCACAGGACAC142210.3700792934116465No Hit
TAATTGCCTGTCTGGC130100.33856491155935037No Hit
TGTCGAAACTTCGCAA127660.3322151930028184No Hit
GGAAGGACTAGGTAAT114370.2976300456190845No Hit
AATGATGGAAAGCTAA100610.2618217967101171No Hit
CATGTCAGAGGTTTGT99470.2588551249255079No Hit
GGGGGGGGGGGGGGGG98120.25534196097004963No Hit
TCGACCTTGTTTCGCC95770.2492264533438815No Hit
GTGAGATCTCGATTAC83070.21617668872586654No Hit
ATGGGTACTTGGCTGC78610.2045702359545006No Hit
AAACGACCTAGGGAGG77370.20134332980282044No Hit
AGCCTACCTTAACTCG72750.18932050204414094No Hit
TGTTCCTCTTTATGGC71820.18690032243038082No Hit
CAGCTCACTGTTTACG71430.18588540839880396No Hit
GCTATGATGACCTGCG71390.1857813146519756No Hit
TTGCGATGACATTCAG71120.18507868186088391No Hit
CCTGTTGACCCTAGTA65810.17126023696941464No Hit
CTGCCTTGACCATAAC65670.17089590885551528No Hit
CAATGTGACCAACGCC63500.1652488230900749No Hit
TAACCAGACATCACAC63200.16446811998886196No Hit
AGCTTGTGACTCACTC62680.16311490128009284No Hit
CATGATGTGTCATGTG61810.1608508622865753No Hit
ATGCCGCGATGCCACG60590.15767600300830928No Hit
ATGGGTACTTTCGGGC60280.15686927647038923No Hit
CATGCAAACGAAGGCT60140.15650494835648987No Hit
CACAGCTCTGGACTGA59790.15559412807174142No Hit
CTATTCAACCGAACGA58820.15306985471115286No Hit
TGGGCCATGCGTTCTC57770.15033739385690753No Hit
ATTAGCGTGGTCGGTC56720.1476049330026622No Hit
TTGTTTGTGATACGCT56450.14690230021157055No Hit
AGAACGCGAGGAATAT55880.14541896431926593No Hit
CACTATACTACGCCAC54400.14156749568661536No Hit
CCGCTATTGTTCGCAA54120.14083883945881662No Hit
CATTAGTCTATTCTGG53890.14024030041455335No Hit
GGGCTGACTAATACAG53820.14005813635760367No Hit
ATAGGAAACAGACTTC51530.1340987693516781No Hit
GGGTCGTACCGCTCGA51510.13404672247826394No Hit
AACCAACACCGGAATG50660.13183473035816057No Hit
AACGTCCCTTACAGAA50630.13175666004803926No Hit
CCCAATGCTGGAATGC50550.13154847255438246No Hit
AGCTCGGACCTTAAGC50130.13045548821268435No Hit
GGTAGCCTGTGCCACG50110.13040344133927015No Hit
CCTACGGGATGGAACG50040.13022127728232047No Hit
GGCTTGCGAGTACGTT49950.1299870663519566No Hit
TTGACGTGACCTCAAA49930.12993501947854239No Hit
CTGCCATTGCACAGTT49930.12993501947854239No Hit
ATAGCCAACATGGCCC49600.12907624606720813No Hit
TTGTAACCTCATCCTC49330.12837361327611646No Hit
CTGATTACTGCTTTGA48990.1274888164280751No Hit
TCAGGCTCTTAAAGCA48740.12683823051039766No Hit
TGGAGTTACAAGTCTC48440.12605752740918472No Hit
TGTTTGTTGCGCTCGA47620.12392360559920265No Hit
CGCTGAGTGTTAGCTG47020.12236219939677673No Hit
ATCTTACTGCGCACTG47000.12231015252336254No Hit
CGCTTACTGGCCACGT46570.1211911447449573No Hit
TCCAAAGTGAAGGCCA46520.12106102756142181No Hit
GCAGATACTCGGCTCA45470.11832856670717648No Hit
TGGGTGCACTTCTGAG45410.1181724260869339No Hit
GCGTCGATGCTTGAAC45390.11812037921351969No Hit
CATGTTACTAACGTGG45330.11796423859327711No Hit
CGCTTCCCTGCGCTGT45170.11754786360596353No Hit
CGATCAAACCGATCGC44650.11619464489719442No Hit
TTCTAACACTACGTTG44530.11588236365670923No Hit
AGCCGGTACGCGCAAA44290.11525780117573887No Hit
CTCGGATCTTTCTGAG44150.11489347306183949No Hit
CCTCCCTTGTTTCGCC43670.11364434809989876No Hit
CGAGTCTCTTACTTTC43130.11223908251771544No Hit
GTAAGAAACGACAAAT43080.11210896533417995No Hit
AGTGGTACTCAACGCC43000.11190077784052317No Hit
ACCTGCTTGCCAAACT42640.11096393411906763No Hit
AACCACTGAAAACATG42150.10968878572041982No Hit
TACGCCTTGGGTTGAG41950.10916831698627784No Hit
CCTTCAGTGTAGCTTG41910.10906422323944945No Hit
ATCGCAATGTAACTCG41800.10877796543567136No Hit
GATACCATGTCTGGAT41750.10864784825213587No Hit
GCGACGTTGCTTAGTG41440.10784112171421582No Hit
TACAACCGATTCCATT41370.10765895765726613No Hit
TGAGATAGACTCATCC41340.10758088734714483No Hit
TATCTCCCTGGAATTA41340.10758088734714483No Hit
ATTGAGAGATGATCAC40760.10607152801813313No Hit
CTTAGGCCTTATGACC40670.10583731708776925No Hit
GAAAGTAACCCTGCGA40430.1052127546067989No Hit
TTCACGCTGTGGGCAA40350.1050045671131421No Hit
GTCCTGACTTTACGAC40220.10466626243594981No Hit
AACAGCTACTCGAGAG40160.10451012181570722No Hit
AGAACAATGAGTCGGA40020.10414579370180785No Hit
TCCGGGATGCGAGTTT39620.1031048562335239No Hit
TGGTCCTTGTTTCTGT39350.10240222344243224No Hit
TTCTATGACCAACGCC38780.10091888755012764No Hit
GGTCAGAGAACCAGTT38730.10078877036659216No Hit
GTTGCTAGACGCTCGA38720.10076274692988506No Hit
GTGTACTGAATCACAC38670.10063262974634955No Hit
ACCTCCATGGAATTGA38620.10050251256281408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)