FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1113078
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA42910.3855075744916349No Hit
CATTCAACTAGGCATG40830.36682065407815084No Hit
GTCGACCGATGCTCAA38670.34741500595645586No Hit
GGGGGGGGGGGGGGGG32440.29144408567953006No Hit
ACTGGGCACTTCTCGC32370.29081519893484553No Hit
TGTAAGCTGTTGTGAC31130.2796749194575762No Hit
GCTTTAGGAACTAGTC26580.23879728105307982No Hit
TAGTTGCGACATAGCT18670.16773307890372463No Hit
CATCAGTGATTCGCAA18020.16189341627451087No Hit
CAGGAGCCTCGTGCAC15130.1359293778153912No Hit
CAGGAGCCTTCCAATG13870.12460941641106912No Hit
TCCTTAAACAGGGAGG12410.11149263573621973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)