FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3840892
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG117010.304642775688564No Hit
TCGCGGTGAGTCTTGA105820.275508918240867No Hit
GGACACCTGGCTCCTT101730.2648603501478302No Hit
GTTAAGAGAGTACGTT75210.19581388906535252No Hit
CGCTTACTGATCACAC69070.17982801911639276No Hit
TACCAGTGATACGATC65610.170819695008347No Hit
TTGTGGTGAAAGACAT62520.16277468879624837No Hit
ATCTTACTGGTTTGGT62270.16212379832601384No Hit
ATAGATGGAGAGTAAT60340.15709892389580338No Hit
ATTCCTAACTGCGTGC59790.15566696486128742No Hit
ATATGCCGAGAACAGC56100.14605982152062594No Hit
TGGAACACTTGAGGCA54790.14264915545659707No Hit
CTTGACGCTCAGGGTA52590.1369213193185333No Hit
CTTTCTGCTCTTGTGA52500.1366869987492489No Hit
GCGGTTCGAAGCAAGC49320.1284076719678658No Hit
AGCTCTGCTGGCCTGT48770.12697571293334986No Hit
AGTTCACGACCAGAGA47550.12379936743860541No Hit
AGGTAGCGATTGACCA47190.1228620851614677No Hit
ACTGGAACTCTGGAAG47020.12241947964170823No Hit
TGTGACTGACCGTTAA46410.12083130689433601No Hit
GCTATACGACAGGTGA46240.12038870137457652No Hit
ACGCTCTTGCCTCAAA44830.11671767912245384No Hit
ACCCTTTCTAGGTGAC44590.11609282427102871No Hit
TGTACCCTGCTGAGAG43510.1132809774396156No Hit
ACACTCCACCGTACAT41820.10888095786083024No Hit
TCAGTCCACCCAGCAC41700.10856853043511767No Hit
TTCCAAACTCCGCTAG41350.10765728377678935No Hit
ACATGTGTGTCAATGC40630.10578271922251394No Hit
CACAGCTCTCTCTGGG40180.1046111163760918No Hit
TCCCAGACTCCTAACA39990.10411643961871356No Hit
CAGTGGAGAGATCATC39760.10351762038609781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)