FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4234495
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG414445297.87358350877732No Hit
CTATTTGA307050.7251159819529838No Hit
CTAGTTGG75430.17813222119756902No Hit
CAATTTGG60830.14365349350985182No Hit
CTAATTGG51590.12183270968557053No Hit
CTATTAGG48000.1133547211650976No Hit
CTTTTTGG47140.11132378241088961No Hit
CTATATGG45640.1077814473744803No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)