FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3219211
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT307872195.63588717856642No Hit
GCGCCCCT448661.39369553595586No Hit
GCGCACCA243380.75602375861663No Hit
GCGCACAT76070.23630013689689805No Hit
GCGCACCG75470.2344363261681201No Hit
CCGCACCT67060.20831191245308245No Hit
GCCCACCT60500.18793424848511017No Hit
GCGAACCT50290.15621840258373867No Hit
GCGCAACT48240.14985038259374736No Hit
GCGCACGT39110.12148939600417619No Hit
GAGCACCT34480.10710698988043964No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)