FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5308734
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC282410.531972406227172No Hit
CTCCTAGTGAACGTAA277830.5233451139198159No Hit
CGACCAGACGCGCTGT258710.4873289940690191No Hit
TAGCTTTACCCTATCC242240.4563046481515179No Hit
CCAGGACTGTAACTCG189290.35656335389944194No Hit
ATCTGTACTGGGACTA173990.32774292326569765No Hit
CTTCCTTTGGCTCAGC165790.312296679396632No Hit
GTTCTCGACCGTAGAG157820.29728368383121095No Hit
CGATCAAACCCGGCTA153530.2892026611241023No Hit
AGACCATTGAATCCAC141350.26625933791370976No Hit
TGCTGCTACTTTCTTG138220.2603633936075908No Hit
GGGGGGGGGGGGGGGG129710.24433320637274347No Hit
ACAGCCGACTTGCGTA125230.2358942828930589No Hit
AACTTACCTCACCTAA116480.21941201047179984No Hit
CGCGTTGGAGCGGTTC108760.2048699369755576No Hit
ATCGAAAGATTTCCGC106130.19991583680779634No Hit
CCCTGAACTAGCTTTG102200.19251294188030518No Hit
GTAACTGTGTGAAAGT99800.1879920900161884No Hit
AGTGGAGTGAGTTGAA98840.1861837492705417No Hit
CAATTCGGATAACGGG96010.18085291144743737No Hit
AAGAACCCTTAACCCA88580.1668571075514426No Hit
GGCAACAGAATAGCAA86510.16295787281864188No Hit
GGGTAGAACCAGTCTA86140.1622609081562572No Hit
TTCCTAAACTAATGCC85170.16043373052784335No Hit
TCCGGGAACGTTCTCC83840.15792842511981198No Hit
CGCGATCGATATCTGG82650.15568683607052078No Hit
GTGAAGCGATCCCAGG82500.15540428282901347No Hit
TTTAGTCTGAGCAATA81340.1532192044280237No Hit
TGGAACACTCCTAGTA80670.15195713328262445No Hit
TGCAGATACTGCCACG78850.14852882061900258No Hit
CTTTAACTGTCCGTAA76980.14500632354154494No Hit
TGATAGAGAGACTGTT76640.14436586952746172No Hit
AGTCCTGCTCGAACGA76200.143537046685707No Hit
AGGTGTGGATCATGTG73470.13839457769027416No Hit
CACATCCTGAGCCTAT72680.13690646395166908No Hit
TCTCAGAGATGCATGT72380.13634135746865447No Hit
CATAGGTACAAGGTGC71520.1347213855506793No Hit
TCAAAGCACTCTGCAA71110.13394907335722603No Hit
TGCAGTATGACACCGC71060.1338548889433903No Hit
ATTTCTGACGGGTAGT70860.1334781512880472No Hit
CTTAGATCTTGTCACA70450.13270583909459394No Hit
CTATTGGGACTTGTGA69800.13148144171472897No Hit
TACGTTTACTGCACCG68500.12903264695499908No Hit
ATGTACGTGTACTTTC67990.12807196593387424No Hit
TGGCAATTGAGTGGTG67600.12733732750595528No Hit
TGAACTGTGAACGTAA67100.12639548336759762No Hit
GCAACTTGAAGGTGCA66370.12502039092559544No Hit
AGAGTACCTTAATCGC65930.1241915680838407No Hit
TCTATGGGATGCTCAA65670.12370180913189473No Hit
TTCTTAGACGTCCCGA64690.1218557946207137No Hit
CGAGTCTCTGCTACGC64600.12168626267580933No Hit
TGAGGGATGTACGTTG64430.12136603566876773No Hit
GGTCTAAACTCCTACC63800.12017931205443708No Hit
TACTGTTTGCTTAAGC63510.11963304245418964No Hit
TCCATTTGAAATCTGC62100.11697704198402105No Hit
CTACAACGAATCTGTG61270.11541358071434733No Hit
GGGTGTGCTCGCAAAG60380.1137370981480707No Hit
CATTCTATGCCTAGCG59900.11283292777524735No Hit
TTGCGGTCTTTTGGGT59740.1125315376509729No Hit
GAGTGTTACACCTGCG59660.11238084258883567No Hit
CACCAGGTGCGCCACA59600.11226782129223276No Hit
CTCAATTTGGAATCTC59370.11183457298858823No Hit
TCGGACCGATAGGCGA59340.11177806234028678No Hit
CTAGCTCACGAATAGT58680.11053482807765466No Hit
TCCGGGTGAACACCTA58340.10989437406357147No Hit
CACATTACTGATGGAC57470.10825556526282915No Hit
GGGATGTGACTGGAAG57400.10812370708345907No Hit
CGAGTCTCTTGGAACG57210.10776580631088316No Hit
CTTTCGTCTCGAACGA56830.10705000476573134No Hit
TGCTAGTGAAGGCGTA56700.10680512528975836No Hit
GGTCGCATGGTACTAC56360.10616467127567515No Hit
GTAATCTCTACACAAA56230.10591979179970215No Hit
AGCCAATTGTTATGGC56200.10586328115140069No Hit
TGTAAGCACGCGCTGT55990.10546770661329047No Hit
AGACTACTGGCCCTAG55350.10426214611619267No Hit
TGCGCAGACATCAGGG55300.10416796170235691No Hit
ACCAAGTTGAAGCTAA55020.10364052898487663No Hit
ATGTCCAGACCGCTAG54970.10354634457104087No Hit
CATAGTCGAAGATTCC54610.10286821679142334No Hit
ACCTCAGCTAATCCGT54400.10247264225331312No Hit
TAGTACCGAACGAGCA53840.10141777681835255No Hit
ATAGCCAACCGTTCTC53230.1002687269695562No Hit
CTAACAGTGCATGATC53170.10015570567295329No Hit
AGGCGATGACCTGCGA53130.10008035814188468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)