FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1520645
Sequences flagged as poor quality0
Sequence length8
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGTCAA143255794.20719497318572No Hit
TTAGTCAA672824.424569837141476No Hit
TCAGGCAA31090.20445271578836613No Hit
TCAGACAA30390.19984940600863452No Hit
TCAGTAAA28500.1874204696033591No Hit
ACAGTCAA25640.16861266107474132TruSeq Adapter, Index 13 (100% over 8bp)
TCAGTCAT16580.10903268021135767No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)