FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1520645
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT286091.881372706976316No Hit
AAATAGGTGTTGCGTA120780.7942682217085513No Hit
GGCTTGCGACGACATT112990.7430399600169665No Hit
TATCACTACTGGTCCG105570.6942448763518112No Hit
ATGGGTTACCATGCGC101970.6705707117703342No Hit
GTGTTGTGAGGGTAGT70180.46151468620223657No Hit
CTAATCTTGCCACTTC65080.42797628637847757No Hit
CTGCTTTCTCCACTTC60660.3989096731978864No Hit
AGAGAATTGCCTCCTA55740.36655498160320127No Hit
CTGGCCAGAGGAATGC44780.29448030276626036No Hit
AGCCGAGCTGCCCTTT43040.28303778988521316No Hit
GGGGGGGGGGGGGGGG41320.27172680014072975No Hit
AATGGTGCTTCGTACA38940.25607554688964224No Hit
TCCCTGTGACCCGCAA33580.22082734629055434No Hit
GAGAGAAGACTCACGG31620.20793807890730578No Hit
TGCCGTTACAATCTGC29670.19511457309233912No Hit
CTTAATCTGGGAATTA28410.18682861548882218No Hit
TTGTCAACTAATACAG27870.18327749080160063No Hit
GCTGTTCTGATAGGTA27630.1816992131628355No Hit
TCGTATACTTTCTGGA27040.17781928063420457No Hit
TCTTTCCACCGAGTGA26390.17354477869588233No Hit
GGGATGTGAAGGTGCA26090.17157193164742593No Hit
GTAATCGTGATCCTCC25670.16880994577958697No Hit
TAGCGCGACAAGACAT25590.1682838532333319No Hit
AGTCCTGCTCCTAGTA24610.16183921954170763No Hit
GCTCCTAACCTATCTT24140.15874842583245924No Hit
GCAAATCTGGAATTGA21880.14388631140075428No Hit
GTTGTTGGATTCCATT21640.14230803376198917No Hit
TTGCGTCACCACTCAA21390.14066399455494213No Hit
TGCAATGACACCTTGA21180.13928300162102267No Hit
TGTCAATCTGGTGTCC20580.13533730752410986No Hit
CCTTTCTACTCGGGCT19720.12968181265186812No Hit
GGTTGAACTTCTTTGT18970.12474969503072708No Hit
CAAGTGGGATAGCGAG18800.12363174836993512No Hit
TACGCCTTGCTGATCA18670.12277684798227069No Hit
TACAACCGATCGCTAA18600.12231651700429752No Hit
TTGTTTGTGGCGCTGT18270.12014638525099545No Hit
TAAGGGCGATTTCTTG18250.1200148621144317No Hit
CCCACCTCTCATGATC18150.11935724643161291No Hit
TTCCACTCTCGAATCT17960.11810777663425716No Hit
GAGGTGCCTTCGTACA17850.11738439938315649No Hit
AATCCAGACTACCAAC17190.11304413587655239No Hit
CCTTTCTACTCATTTC17140.11271532803514299No Hit
TCTTTCCACTTCGCAA16980.1116631429426329No Hit
CTGCCATTGTCTTTGT16920.1112685735329416No Hit
AGAACGCGAGGAGTCA16770.11028215000871341No Hit
GTGGTAACTTTTCCGC16440.10811201825541136No Hit
CGGAATTTGAGAGGCT15730.10344294690739786No Hit
GAGAGGTTGATGTGGG15310.10068096103955887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)