FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004946907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1057520
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC102905597.30832513805886No Hit
CCGCTTAC41180.38940161888191244No Hit
CAGCTAAC31220.2952190029502988No Hit
CAGCTTAA29250.2765905136545881No Hit
CAGCATAC27660.2615553370149028No Hit
AAGCTTAC25740.24339965201603753No Hit
CACCTTAC20870.19734851350329072No Hit
CAGATTAC19840.18760874498827446No Hit
CATCTTAC15550.14704213631893487No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)