FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004946923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30664733
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT3010318398.16874322695065No Hit
AGCTGCGA1039890.33911594795232686No Hit
AGCGGCGT539570.17595783403690488No Hit
AGCTGCGG467910.15258896922402682No Hit
AGCAGCGT422420.13775433818386743No Hit
TGCTGCGT318370.10382285082997462No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)