FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3218762
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG314947497.84737113213092No Hit
ATTGGCCG192450.5979006835547331No Hit
ATTGGACA69480.21585938941742197No Hit
ATTGGACC50670.157420772334208No Hit
ATAGGACG44760.1390596757386846No Hit
AATGGACG40650.12629079130423435No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)