FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004946929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16471047
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT1626492998.74860414155822No Hit
TTAAGCCA503760.3058457668173735No Hit
ATAAGCCT228270.13858863981142183No Hit
TAAAGCCT223000.13538908607327757No Hit
TTAAGCAT184350.11192366824039784No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)