FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3008440
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA112290.37324992354841713No Hit
GTCGACCGATGCTCAA100720.3347914533778304No Hit
CATTCAACTAGGCATG97760.3249524670593397No Hit
TGTAAGCTGTTGTGAC78020.25933706505697307No Hit
GGGGGGGGGGGGGGGG77890.2589049474146069No Hit
ACTGGGCACTTCTCGC76810.2553150470011035No Hit
GCTTTAGGAACTAGTC70700.23500551780989481No Hit
CATCAGTGATTCGCAA44700.1485819893366662No Hit
TAGTTGCGACATAGCT44640.14838255042480486No Hit
CAGGAGCCTCGTGCAC36780.122256052970975No Hit
CAGGAGCCTTCCAATG34740.11547512996769091No Hit
TCCTTAAACAGGGAGG30780.10231216178484531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)