FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3855319
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT802782.082266084855754No Hit
AAATAGGTGTTGCGTA321630.8342500322282022No Hit
TATCACTACTGGTCCG281900.7311975999910773No Hit
ATGGGTTACCATGCGC267960.6950397619496597No Hit
GTGTTGTGAGGGTAGT180090.4671208789726609No Hit
CTAATCTTGCCACTTC175720.4557858895723026No Hit
GGCTTGCGACGACATT174650.4530105031516199No Hit
CTGCTTTCTCCACTTC156990.40720365811493164No Hit
AGAGAATTGCCTCCTA149360.3874128184982877No Hit
GGGGGGGGGGGGGGGG119340.30954636957408715No Hit
AGCCGAGCTGCCCTTT114880.2979779364561013No Hit
CTGGCCAGAGGAATGC113620.2947097244093161No Hit
AATGGTGCTTCGTACA103640.2688234099435092No Hit
GCTCCTAACCTATCTT89900.23318433571904168No Hit
TCCCTGTGACCCGCAA88990.23082396035191902No Hit
GAGAGAAGACTCACGG80200.20802429059696487No Hit
TGCCGTTACAATCTGC77550.20115067002237688No Hit
CTTAATCTGGGAATTA74550.19336921276812633No Hit
TTGTCAACTAATACAG73520.19069757911083363No Hit
GCTGTTCTGATAGGTA71770.1861583957125208No Hit
TCTTTCCACCGAGTGA70840.18374614396370312No Hit
GTAATCGTGATCCTCC69460.18016667362674788No Hit
TAGCGCGACAAGACAT65830.1707511103491047No Hit
TCGTATACTTTCTGGA64690.1677941565924895No Hit
AGTCCTGCTCCTAGTA63110.16369592243858422No Hit
GGGATGTGAAGGTGCA60540.1570298073907762No Hit
TTGCGTCACCACTCAA56670.146991727532793No Hit
GCAAATCTGGAATTGA56190.1457466943721129No Hit
GTTGTTGGATTCCATT55460.14385320644024527No Hit
TGCAATGACACCTTGA54520.1414150165005801No Hit
TGTCAATCTGGTGTCC52060.13503422155209466No Hit
CCTTTCTACTCGGGCT51940.13472296326192462No Hit
TACGCCTTGCTGATCA51240.1329072899025995No Hit
TACAACCGATCGCTAA49680.1288609321303892No Hit
GGTTGAACTTCTTTGT49570.12857561203106668No Hit
TTGTTTGTGGCGCTGT49240.12771965173309913No Hit
CAAGTGGGATAGCGAG48480.125748349228689No Hit
CCCACCTCTCATGATC47100.12216887889173374No Hit
AATCCAGACTACCAAC46930.1217279296473262No Hit
AGAACGCGAGGAGTCA46110.11960099799783105No Hit
TAAGGGCGATTTCTTG45960.11921192513511852No Hit
TTCCACTCTCGAATCT45550.11814845931037093No Hit
CCTTTCTACTCATTTC45160.11713686986731836No Hit
CTGCCATTGTCTTTGT44800.11620309499680831No Hit
GTGGTAACTTTTCCGC43340.11241611913307303No Hit
TCTTTCCACTTCGCAA42960.11143046788086797No Hit
CGGAATTTGAGAGGCT41870.10860320507849025No Hit
GCTCCTAACGAATAGT41590.1078769357347602No Hit
GCGACGTTGAGTGGTG40160.10416777444356745No Hit
GAGAGGTTGATGTGGG39590.10268929756525984No Hit
CGTTTGCTGGCTAATC39500.10245585384763232No Hit
ATGTGTGTGCCTTTGC38780.10058830410661218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)