FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3408296
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG330311396.9139124066689No Hit
CTATTTGA239760.7034600281196234No Hit
CGATTTGG76720.22509782014238203No Hit
CTTTTTGG68750.20171370092268984No Hit
CTATTTGC63670.18680889218542052No Hit
CTAATTGG62850.18440299786168807No Hit
CAATTTGG61180.17950318869018417No Hit
CTATATGG59760.1753368838856719No Hit
CTATTTTG58960.17298966991129877No Hit
CTAGTTGG51000.14963489086628626No Hit
CTATTTCG50670.14866666510185733No Hit
GTATTTGG49190.14432431924926709No Hit
ATATTTGG48320.1417717240521363No Hit
CTATTAGG45430.13329241356971344No Hit
CTATTTGT35580.10439234151024442No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)