FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3408296
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT94570.2774700319455822No Hit
TCGCGGTGAGTCTTGA93340.27386119045998353No Hit
GGGGGGGGGGGGGGGG82140.2410001948187599No Hit
GTTAAGAGAGTACGTT65020.19076981576717514No Hit
CGCTTACTGATCACAC58010.17020235331673073No Hit
TTGTGGTGAAAGACAT54460.15978659130545No Hit
ATCTTACTGGTTTGGT53220.15614840964517165No Hit
TACCAGTGATACGATC52780.15485744195926646No Hit
ATAGATGGAGAGTAAT52190.15312637165316628No Hit
ATTCCTAACTGCGTGC51280.15045641575731686No Hit
ATATGCCGAGAACAGC47920.14059811706494976No Hit
GCGGTTCGAAGCAAGC46210.1355809471947272No Hit
TGGAACACTTGAGGCA45240.13273495025079982No Hit
CTTGACGCTCAGGGTA43870.12871534631968584No Hit
GCTATACGACAGGTGA43100.12645615286935175No Hit
AGGTAGCGATTGACCA42120.12358081575074464No Hit
AGCTCTGCTGGCCTGT41470.1216737043965665No Hit
CTTTCTGCTCTTGTGA40530.11891572797667808No Hit
TGTGACTGACCGTTAA38630.11334109478754192No Hit
ACGCTCTTGCCTCAAA38200.11207946727631637No Hit
ACTGGAACTCTGGAAG37230.10923347033238898No Hit
AGTTCACGACCAGAGA37140.108969408760272No Hit
TGTACCCTGCTGAGAG36620.10744371967692948No Hit
TTCCAAACTCCGCTAG35780.1049791450038377No Hit
GGGAGCTCTTGATGAA35530.1042456406368461No Hit
ACCCTTTCTAGGTGAC34870.10230918910798827No Hit
ACACTCCACCGTACAT34480.10116492229548138No Hit
ACATGTGTGTCAATGC34300.10063679915124743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)