FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4004944
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA203510.5081469303940329No Hit
CGACCAGACGCGCTGT192610.4809305698157078No Hit
TAGCTTTACCCTATCC181840.45403880803327085No Hit
CCAGGACTGTAACTCG143050.3571835211678366No Hit
ATCTGTACTGGGACTA133830.3341619757979138No Hit
CTTCCTTTGGCTCAGC124670.3112902452568625No Hit
GTTCTCGACCGTAGAG123180.3075698436732199No Hit
CGATCAAACCCGGCTA115570.28856832954468276No Hit
AGACCATTGAATCCAC105040.2622758270777319No Hit
GGCAACAGAATAGCAA100090.24991610369583195No Hit
TGCTGCTACTTTCTTG99830.24926690610405539No Hit
GGGGGGGGGGGGGGGG97530.24352400433064733No Hit
ACAGCCGACTTGCGTA92910.23198826250754068No Hit
AACTTACCTCACCTAA86340.2155835387461098No Hit
CGCGTTGGAGCGGTTC80590.20122628431258963No Hit
ATCGAAAGATTTCCGC79530.1985795556691929No Hit
CCCTGAACTAGCTTTG75950.18964060421319248No Hit
GTAACTGTGTGAAAGT75900.18951575852246624No Hit
AGTGGAGTGAGTTGAA73840.18437211606454423No Hit
CAATTCGGATAACGGG71400.17827964635710264No Hit
GGGTAGAACCAGTCTA68880.171987423544499No Hit
AAGAACCCTTAACCCA65490.1635228857132584No Hit
TTCCTAAACTAATGCC64760.16170013862865498No Hit
CGCGATCGATATCTGG61900.15455896511911277No Hit
TTTAGTCTGAGCAATA61810.1543342428758055No Hit
TCCGGGAACGTTCTCC61410.1533354773499954No Hit
TGGAACACTCCTAGTA60020.1498647671478053No Hit
TGCAGATACTGCCACG58350.14569492107754814No Hit
GTGAAGCGATCCCAGG57780.14427168020326875No Hit
CTTTAACTGTCCGTAA57300.14307316157229666No Hit
TGATAGAGAGACTGTT56720.141624951559872No Hit
CACATCCTGAGCCTAT56670.14150010586914574No Hit
AGGTGTGGATCATGTG56360.1407260625866429No Hit
GCAACTTGAAGGTGCA55600.13882840808760372No Hit
AGTCCTGCTCGAACGA54740.13668106220711201No Hit
TGCAGTATGACACCGC54680.13653124737824052No Hit
CTATTGGGACTTGTGA54150.1352078830565421No Hit
CATAGGTACAAGGTGC53440.13343507424822917No Hit
ATTTCTGACGGGTAGT52970.13226152475540232No Hit
TCTCAGAGATGCATGT52840.13193692595951403No Hit
TCAAAGCACTCTGCAA52460.13098809870999445No Hit
CTTAGATCTTGTCACA52320.1306385307759609No Hit
TGGCAATTGAGTGGTG51140.12769217247482112No Hit
TACGTTTACTGCACCG50550.12621899332425124No Hit
TGAGGGATGTACGTTG50530.12616905504796072No Hit
GAGTGTTACACCTGCG50200.1253450734891674No Hit
GGTCTAAACTCCTACC50100.12509538210771487No Hit
TGAACTGTGAACGTAA50070.1250204746932791No Hit
ATGTACGTGTACTTTC50050.12497053641698859No Hit
AGAGTACCTTAATCGC49660.12399674002932376No Hit
TCTATGGGATGCTCAA48310.12062590637971467No Hit
TTCTTAGACGTCCCGA47610.118878066709547No Hit
GGTCGCATGGTACTAC47570.11877819015696597No Hit
GATGAATGACTCCTAC47490.11857843705180397No Hit
GGGTGTGCTCGCAAAG47030.11742985669712235No Hit
CGAGTCTCTGCTACGC46510.11613146151356922No Hit
TACTGTTTGCTTAAGC46230.11543232564550215No Hit
TCCATTTGAAATCTGC46190.11533244909292115No Hit
GGGATGTGACTGGAAG45570.1137843625279155No Hit
GCATGATACTTGCGTA44860.11201155371960259No Hit
CATTCTATGCCTAGCG44690.11158707837113327No Hit
TCCGGGTGAACACCTA44390.1108380042267757No Hit
CACCAGGTGCGCCACA44160.11026371404943491No Hit
TTGCGGTCTTTTGGGT44040.10996408439169186No Hit
GTAATCTCTACACAAA43810.10938979421435108No Hit
TCGGACCGATAGGCGA43240.10796655334007167No Hit
CTACAACGAATCTGTG43170.1077917693730549No Hit
AGACTACTGGCCCTAG42920.1071675409194236No Hit
GGCTGACTGAAACTGA42680.10656828160393753No Hit
CTAGCTCACGAATAGT42480.10606889884103249No Hit
ACCAAGTTGAAGCTAA42110.10514504072965815No Hit
AGCCAATTGTTATGGC41880.10457075055231733No Hit
CACATTACTGATGGAC41860.10452081227602683No Hit
CTTTCGTCTCGAACGA41800.10437099744715532No Hit
CGAGTCTCTTGGAACG41560.10377173813166925No Hit
TGTAAGCACGCGCTGT41330.10319744795432846No Hit
GGGCCTTGACTATCTT41000.10237346639553511No Hit
CATAGTCGAAGATTCC40740.10172426880375855No Hit
ATGTCCAGACCGCTAG40450.10100016379754623No Hit
TGCGCAGACATCAGGG40220.10042587362020543No Hit
TGCTAGTGAAGGCGTA40050.10000139827173614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)