FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4004944
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA384570996.02403928744071No Hit
TCCTGCGA447991.1185924197691652No Hit
TCATGCGC214240.5349388156238889No Hit
TCATGCAA105810.2641984507149164No Hit
TCAAGCGA87620.21877958842870215No Hit
TCATGCCA75130.1875931348852818No Hit
ACATGCGA74700.18651946194503594No Hit
TCATCCGA73910.184546900031561No Hit
TCATGAGA67180.1677426700598061No Hit
TAATGCGA64780.16175007690494547No Hit
TCATGCGT50930.12716782057377082No Hit
TCATGGGA43310.10814133730708843No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)