FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946950

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946950
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7180353
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAGCA695417696.85005737183117No Hit
GTGGCGCA682610.9506635676546822No Hit
GGGGAGCA653700.91040092318581No Hit
GAGGAGCA106310.14805678773731598No Hit
GTGGAGAA86160.11999410056859322No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)