FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2531161
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA247108797.62662272372243No Hit
CGTGCAAA94470.3732279376934142No Hit
CGTGCGAA61140.24154923373108228No Hit
CGTGCTTA53720.2122346227679709No Hit
CGTGGTAA44590.17616421871228263No Hit
CCTGCTAA39960.15787221753179667No Hit
CGAGCTAA39170.15475112013815004No Hit
CGTTCTAA35150.13886908023630262No Hit
CTTGCTAA25760.1017714795700471No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)