FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004946955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16409080
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCCTGA1608280098.01158870576533No Hit
TATCCTCA817320.49809008183274134No Hit
TATCCTAA433620.26425613136141696No Hit
AATCCTGA395330.2409214898093007No Hit
TAACCTGA248680.1515502392577768No Hit
TATCCTGC238820.14554137099703335No Hit
TATCCAGA190330.11599065883035489No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)