FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004946958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17946938
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT1747503297.37054866963936No Hit
AGCTGCGA653140.3639283759714331No Hit
AGCTGCGG612510.3412894166124606No Hit
AGCAGCGT377720.21046487150064264No Hit
CGCTGCGT376800.20995224923605352No Hit
AGCGGCGT308390.17183432627894518No Hit
AGCTGGGT224200.12492381708790659No Hit
ACCTGCGT223730.12466193397447521No Hit
TGCTGCGT188900.10525472367486867No Hit
AGCTGCCT188350.10494826471234259No Hit
AGATGCGT184730.10293120754080724No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)