FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004946959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17946938
Sequences flagged as poor quality0
Sequence length34
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGAGAC18450.010.31978622
CGAGACA19000.09.87382423
TATACCG3301.8189894E-129.7578235
ATCTCCG20500.09.56089910
TATACTG20450.09.4476725
CCCACGA20750.09.44544319
CTTATAC25350.09.3339081
TAGACAG32750.09.1910725
TATACAC37700.09.1353573
TCTCCGA21650.08.98835511
TAGACTG24850.08.7889565
CACGAGA22500.08.71111321
CTAGTAC12150.08.5268233
TAGGACA24000.08.2834284
TACACTG32800.08.2806985
GTATAGA18300.08.2628031
CTTAGAC17850.08.000073
ATACCGT5500.07.89115336
GTATAGG14600.07.7676021
TTAGGAC19950.07.7193653