FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4637607
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT451899997.44247410356246No Hit
ATCGTACA205150.4423617611410367No Hit
ATAGTACT147360.31775008102238933No Hit
ATCGAACT108830.2346684399950233No Hit
AACGTACT99550.2146581200175004No Hit
ATCGTAAT69170.14915019750487696No Hit
ATCCTACT68590.14789955250628178No Hit
CTCGTACT55860.12045005107159791No Hit
ATCGTCCT48430.1044288573826976No Hit
ATCGTAGT47660.10276851833283845No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)