FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1391827
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTACGGG136060497.75668958857673No Hit
GGTACGGA99580.7154624820469785No Hit
GGTCCGGG44970.32310050027769255No Hit
GGAACGGG22970.16503487861637978No Hit
GGTAGGGG14770.10611951054261771No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)