FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004946968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1423156
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT286182.010882854725694No Hit
GGCTTGCGACGACATT123200.8656816259074902No Hit
AAATAGGTGTTGCGTA119090.8368021495886607No Hit
TATCACTACTGGTCCG101890.7159440005171605No Hit
ATGGGTTACCATGCGC98490.6920534361658174No Hit
GTGTTGTGAGGGTAGT65780.46221215383274916No Hit
CTAATCTTGCCACTTC65640.4612284247123998No Hit
CTGCTTTCTCCACTTC60410.424479115430775No Hit
AGAGAATTGCCTCCTA55230.38808113797784644No Hit
AGCCGAGCTGCCCTTT43200.3035506999935355No Hit
CTGGCCAGAGGAATGC41110.2888650295540334No Hit
GGGGGGGGGGGGGGGG38560.2709471062905261No Hit
AATGGTGCTTCGTACA38030.26722298890634616No Hit
GCTCCTAACCTATCTT34090.23953804080508392No Hit
TCCCTGTGACCCGCAA33760.23721925073568886No Hit
GAGAGAAGACTCACGG30350.21325842001860656No Hit
TGCCGTTACAATCTGC29250.2055291197872897No Hit
GCTGTTCTGATAGGTA28830.2025779324262414No Hit
TTGTCAACTAATACAG27860.19576209494953473No Hit
CTTAATCTGGGAATTA26790.18824359381543554No Hit
TCTTTCCACCGAGTGA26620.1870490655978684No Hit
TCGTATACTTTCTGGA25920.18213041999612128No Hit
TAGCGCGACAAGACAT24940.17524431615367536No Hit
GGGATGTGAAGGTGCA24840.17454165249628292No Hit
GTAATCGTGATCCTCC24590.17278499335280179No Hit
AGTCCTGCTCCTAGTA23790.16716368409366225No Hit
GCAAATCTGGAATTGA22840.16048837934843405No Hit
TGCAATGACACCTTGA22250.15634266376981862No Hit
GTTGTTGGATTCCATT21600.15177534999676776No Hit
TTGCGTCACCACTCAA21150.14861336353850174No Hit
TGTCAATCTGGTGTCC20490.14397578339971162No Hit
CCTTTCTACTCGGGCT19670.1382139414090936No Hit
GGTTGAACTTCTTTGT19280.13547355314526305No Hit
TACAACCGATCGCTAA18650.13104677210369067No Hit
CCCACCTCTCATGATC18630.13090623937221219No Hit
TACGCCTTGCTGATCA18480.12985224388612351No Hit
TTGTTTGTGGCGCTGT18110.12725238835377148No Hit
CAAGTGGGATAGCGAG17490.12289587367793832No Hit
GCTCCTAACGAATAGT17380.12212294365480665No Hit
TAAGGGCGATTTCTTG17040.11973388721967233No Hit
CCTTTCTACTCATTTC16840.11832855990488744No Hit
AATCCAGACTACCAAC16790.11797722807619124No Hit
TTCCACTCTCGAATCT16720.11748536351601652No Hit
AGAACGCGAGGAGTCA16700.11734483078453802No Hit
TCTTTCCACTTCGCAA16560.11636110166418862No Hit
CTGCCATTGTCTTTGT16090.11305858247444413No Hit
TAGACCTGACTTAGTG14740.10357262309964614No Hit
GTGGTAACTTTTCCGC14660.10301049217373219No Hit
CGTTTGCTGGCTAATC14480.10174569759042579No Hit
AGCACATTGCTGGAAG14480.10174569759042579No Hit
CGGAATTTGAGAGGCT14430.10139436576172957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)