FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4812199
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC468358397.32729257455895No Hit
AGGCTACA258060.5362621121861336No Hit
AGGCTCCC164530.3419019038905083No Hit
AGGCAACC138250.28729069599989526No Hit
ACGCTACC84490.17557461775791067No Hit
CGGCTACC71060.14766637871792085No Hit
AGTCTACC67860.14101661215589795No Hit
AGGATACC65120.13532274953716586No Hit
AGCCTACC58360.12127511767489249No Hit
AGGCTAAC53580.1113420288728708No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)