FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3176082
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT624531.9663535135427863No Hit
GGCTTGCGACGACATT275090.8661300306478233No Hit
AAATAGGTGTTGCGTA267230.8413825587626517No Hit
TATCACTACTGGTCCG231110.7276575352903357No Hit
ATGGGTTACCATGCGC219920.6924254474538126No Hit
CTAATCTTGCCACTTC144090.4536721658949612No Hit
GTGTTGTGAGGGTAGT141340.4450136992684698No Hit
CTGCTTTCTCCACTTC131230.41318202741616866No Hit
AGAGAATTGCCTCCTA124800.39293695817677254No Hit
GGGGGGGGGGGGGGGG98450.3099731052283915No Hit
AGCCGAGCTGCCCTTT96090.3025425665962025No Hit
CTGGCCAGAGGAATGC93670.29492311596489007No Hit
AATGGTGCTTCGTACA87360.27505587072374077No Hit
GCTCCTAACCTATCTT76920.24218518287626076No Hit
TCCCTGTGACCCGCAA73170.23037818293104523No Hit
GAGAGAAGACTCACGG64940.20446575371794556No Hit
CTTAATCTGGGAATTA62340.1962795670892628No Hit
TGCCGTTACAATCTGC62290.19612214042332662No Hit
GCTGTTCTGATAGGTA61350.19316251910372592No Hit
TTGTCAACTAATACAG61020.19212350310854692No Hit
TCTTTCCACCGAGTGA58260.18343355114886833No Hit
GTAATCGTGATCCTCC58080.18286681515149797No Hit
TAGCGCGACAAGACAT56000.17631786584855177No Hit
GGGATGTGAAGGTGCA54330.17105981520628247No Hit
AGTCCTGCTCCTAGTA53710.16910772454867348No Hit
TCGTATACTTTCTGGA52640.16573879389763865No Hit
GCAAATCTGGAATTGA51840.16321996724265936No Hit
TGCAATGACACCTTGA46490.1463753139874852No Hit
GTTGTTGGATTCCATT46180.14539926865868072No Hit
TTGCGTCACCACTCAA45750.14404539933162935No Hit
TGTCAATCTGGTGTCC45440.14306935400282486No Hit
CCTTTCTACTCGGGCT44210.13919665802079417No Hit
TTGTTTGTGGCGCTGT42180.13280513538378416No Hit
GGTTGAACTTCTTTGT41900.1319235460545414No Hit
TACGCCTTGCTGATCA41690.13126235405760933No Hit
TACAACCGATCGCTAA41060.12927877806681315No Hit
CAAGTGGGATAGCGAG40580.12776748207382554No Hit
CCCACCTCTCATGATC38800.12216309276649659No Hit
TTCCACTCTCGAATCT38310.12062031144032175No Hit
AGAACGCGAGGAGTCA37870.11923495678008314No Hit
TAAGGGCGATTTCTTG37870.11923495678008314No Hit
AATCCAGACTACCAAC37790.1189830741145852No Hit
CCTTTCTACTCATTTC37700.11869970611590004No Hit
GCTCCTAACGAATAGT37250.11728286612247417No Hit
CTGCCATTGTCTTTGT37030.11659018879235485No Hit
TCTTTCCACTTCGCAA35740.11252858081120072No Hit
CGGAATTTGAGAGGCT32990.10387011418470933No Hit
AGCACATTGCTGGAAG32000.10075306619917244No Hit
TATTGCTTGTTCGTTT31840.10024930086817657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)