FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3301214
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA125030.3787394576661798No Hit
CATTCAACTAGGCATG119800.3628968009950279No Hit
GTCGACCGATGCTCAA113690.34438845830655024No Hit
GGGGGGGGGGGGGGGG102880.3116429289346283No Hit
ACTGGGCACTTCTCGC94930.28756087911901496No Hit
TGTAAGCTGTTGTGAC91840.27820068617181437No Hit
GCTTTAGGAACTAGTC78080.236519050264539No Hit
NNNNNNNNNNNNNNNN73800.22355412281663653No Hit
TAGTTGCGACATAGCT55260.16739296513343274No Hit
CATCAGTGATTCGCAA50850.15403424316024347No Hit
CAGGAGCCTCGTGCAC45240.13704049479979186No Hit
CAGGAGCCTTCCAATG39790.12053141662430851No Hit
TCCTTAAACAGGGAGG34810.10544605711716962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)