FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4637607
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA243960.526047161822897No Hit
CGACCAGACGCGCTGT226850.48915313436433916No Hit
GATGAATGACTCCTAC224940.4850346310068965No Hit
TAGCTTTACCCTATCC216860.46761185240577735No Hit
CCAGGACTGTAACTCG166100.3581588521838957No Hit
ATCTGTACTGGGACTA152540.3289196346305325No Hit
CTTCCTTTGGCTCAGC147450.31794414662561965No Hit
CGATCAAACCCGGCTA136330.29396626320427754No Hit
GTTCTCGACCGTAGAG133050.28689365010877377No Hit
AGACCATTGAATCCAC126690.27317968081383354No Hit
TGCTGCTACTTTCTTG119490.2576544325554106No Hit
GGGGGGGGGGGGGGGG115880.24987024558139576No Hit
ACAGCCGACTTGCGTA110090.2373853584402473No Hit
AACTTACCTCACCTAA102260.2205016509592124No Hit
CGCGTTGGAGCGGTTC96990.20913803174783893No Hit
ATCGAAAGATTTCCGC93260.20109509063618372No Hit
CCCTGAACTAGCTTTG89880.19380684909264628No Hit
AGTGGAGTGAGTTGAA89200.19234057564601745No Hit
CAATTCGGATAACGGG86020.1854835909985473No Hit
GTAACTGTGTGAAAGT85870.18516014832649685No Hit
AAGAACCCTTAACCCA77500.16711204722608017No Hit
CGCGATCGATATCTGG76450.16484794852172682No Hit
TTCCTAAACTAATGCC75770.163381675075098No Hit
GGGTAGAACCAGTCTA75100.16193696447327255No Hit
TTTAGTCTGAGCAATA74700.16107445068113793No Hit
TGGAACACTCCTAGTA72000.15525248258422933No Hit
TCCGGGAACGTTCTCC71250.15363526922397694No Hit
TGCAGATACTGCCACG71090.1532902637071231No Hit
GTGAAGCGATCCCAGG70570.1521689957773481No Hit
CTTTAACTGTCCGTAA68150.14695078733493372No Hit
AGTCCTGCTCGAACGA66860.14416918035529963No Hit
TGATAGAGAGACTGTT66770.14397511475206934No Hit
TGCAGTATGACACCGC65230.1406544366523511No Hit
AGGTGTGGATCATGTG64640.13938222880895254No Hit
CACATCCTGAGCCTAT64530.13914503751611554No Hit
TCTCAGAGATGCATGT63470.13685937596695882No Hit
CTATTGGGACTTGTGA63300.1364928076053016No Hit
CATAGGTACAAGGTGC62900.135630293813167No Hit
ATTTCTGACGGGTAGT62490.13474621717622903No Hit
TACGTTTACTGCACCG62300.1343365231249651No Hit
TCAAAGCACTCTGCAA60750.1309942821804435No Hit
CTTAGATCTTGTCACA60620.13071396519799974No Hit
TGGCAATTGAGTGGTG59600.1285145550280565No Hit
GGCAACAGAATAGCAA59170.1275873527015118No Hit
AGAGTACCTTAATCGC58780.12674640175418056No Hit
TGAACTGTGAACGTAA58630.12642295908213008No Hit
ATGTACGTGTACTTTC57910.12487043425628779No Hit
TCTATGGGATGCTCAA57870.12478418287707432No Hit
CGAGTCTCTGCTACGC57790.1246116801186474No Hit
TTCTTAGACGTCCCGA57600.12420198606738345No Hit
TGAGGGATGTACGTTG57590.12418042322258009No Hit
TACTGTTTGCTTAAGC55430.11952284874505321No Hit
TCCATTTGAAATCTGC54070.11659030185179554No Hit
CTACAACGAATCTGTG53980.11639623624856525No Hit
CACCAGGTGCGCCACA53530.11542590823241383No Hit
GGTCTAAACTCCTACC53510.1153827825428071No Hit
CATTCTATGCCTAGCG52910.1140890118546052No Hit
CTCAATTTGGAATCTC52810.11387338340657155No Hit
GGGTGTGCTCGCAAAG52750.11374400633775135No Hit
GCAACTTGAAGGTGCA52510.11322649806247058No Hit
TCCGGGTGAACACCTA51430.11089771082370714No Hit
CTAGCTCACGAATAGT51240.11048801677244319No Hit
AGCCAATTGTTATGGC50780.1094961259114884No Hit
TTGCGGTCTTTTGGGT50670.10925893461865138No Hit
CTTTCGTCTCGAACGA50640.10919424608424129No Hit
TCGGACCGATAGGCGA50270.10839642082651679No Hit
ACCAAGTTGAAGCTAA50000.10781422401682592No Hit
CGAGTCTCTTGGAACG49460.10664983039744419No Hit
TGCTAGTGAAGGCGTA49240.10617544781177017No Hit
TGCGCAGACATCAGGG48750.10511886841640526No Hit
GGGATGTGACTGGAAG48600.10479542574435478No Hit
ATGTCCAGACCGCTAG48540.1046660486755346No Hit
AGACTACTGGCCCTAG48420.10440729453789423No Hit
TGTAAGCACGCGCTGT48320.10419166608986058No Hit
ACCTCAGCTAATCCGT48280.10410541471064712No Hit
CACATTACTGATGGAC48100.10371728350418653No Hit
GTAATCTCTACACAAA47730.10291945824646201No Hit
CATAGTCGAAGATTCC47290.10197069307511396No Hit
AGGCGATGACCTGCGA47140.10164725040306348No Hit
ATAGCCAACCGTTCTC46810.10093567652455242No Hit
AAAGCCTTGAACCAAA46630.10054754531809186No Hit
TAGTACCGAACGAGCA46620.10052598247328849No Hit
TCATCATTGGACTCGC46490.10024566549084474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)