FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004946982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4312861
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA178490.41385521119275576No Hit
CATTCAACTAGGCATG156770.3634942095281995No Hit
GTCGACCGATGCTCAA147560.34213947539695805No Hit
ACTGGGCACTTCTCGC123800.287048434902029No Hit
GGGGGGGGGGGGGGGG121430.281553242731449No Hit
TGTAAGCTGTTGTGAC120910.28034754655900107No Hit
GCTTTAGGAACTAGTC87180.2021396006038683No Hit
TAGTTGCGACATAGCT71990.16691936048947553No Hit
CATCAGTGATTCGCAA67630.15681006181279666No Hit
CAGGAGCCTCGTGCAC57370.13302074887180457No Hit
CAGGAGCCTTCCAATG52380.1214507029092753No Hit
TCCTTAAACAGGGAGG49150.11396147476118522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)