FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4408344
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC431082397.78780875539658No Hit
CAGCATAC117100.2656326275807877No Hit
CAGCTTAA113380.2571940846721581No Hit
CCGCTTAC110010.2495494906931038No Hit
CAGCTAAC104580.23723194015712024No Hit
AAGCTTAC81100.18396930911017834No Hit
CACCTTAC74960.1700411764599133No Hit
CAGATTAC68070.1544117246748439No Hit
CATCTTAC46700.10593547146048495No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)