FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004946987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18639160
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG1826425397.98860570969936No Hit
TCAATTAG403990.2167425999884115No Hit
TCTATTAA393770.21125952027881084No Hit
ACTATTAG388740.20856090081312678No Hit
TCTAATAG353090.18943450241319887No Hit
TCTTTTAG293260.15733541640288512No Hit
TCTATTAT268650.14413203170099942No Hit
TCTATAAG241040.12931913240725443No Hit
TATATTAG198560.10652840578652686No Hit
TCTATTAC197450.10593288538753892No Hit
TCTATTTG194660.10443603681710978No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)