FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004946988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004946988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4431097
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGTCC426775596.31373449960586No Hit
CCCAGTCC492241.1108761554982887No Hit
ACCAGTCA305680.6898517455158395No Hit
ACCAGACC110360.24905796465299676No Hit
ACCACTCC100210.22615167305071407No Hit
ACAAGTCC99130.22371435335313128No Hit
ACCCGTCC59600.13450393886660572TruSeq Adapter, Index 16 (100% over 8bp)
ACCAGTAC58540.13211175471897818No Hit
ACCAGTCG53380.12046678283052707No Hit
AACAGTCC46690.10536894137050035No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)